PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014567-PA
Common NameOsI_16951
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 548aa    MW: 59798.9 Da    PI: 4.9576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014567-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13372418354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++h + ErrRR+++N+ f  L++++P+        K++Ka+iLe+++ Y+k L
  BGIOSGA014567-PA 372 KNHVISERRRREKLNEMFLILKSIVPSiH------KVDKASILEETIAYLKVL 418
                       57999**********************66......***************977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4621197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.834369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.17E-15372423No hitNo description
SuperFamilySSF474591.57E-17372439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10373418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-16373436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MASAPPVQEE ALQPGTNHFR SLLAAAVRSI SWSYAIFWSI SNSCPGVLTW NDGFYNGVVK  60
TRKISNSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR RPIAALSPED LADTEWYYVV  120
CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKTIICIPF TSGVLELGTT  180
DPVLEDPNLV NRIVAYFQEL QFPICLEVLM STSPSPNETE DADIVSEGLI THNAIEEGQM  240
VVSDECVSNA NRDPITMEID ELYSIYEDLD LDTVRFLEDN GWPVNPSSFQ LVSASSTEAV  300
AAAAAANDVD GVANSQVSCF MAWKSAKSNE MAVPVVTGIE SQKLLKKVVD CGARMSTGRG  360
SRAALTQESG IKNHVISERR RREKLNEMFL ILKSIVPSIH KVDKASILEE TIAYLKVLEK  420
RVKELESSSE PSHQRATETG QQRRCEITGK ELVSEIGVSG GGDAGREHHH VNVTVTDKVV  480
LLEVQCRWKE LVMTRVFDAI KSLCLDVLSV QASAPDGLLG LKIQAKFACS GSVAPGMISE  540
ALQKAIGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-1851972192Transcription factor MYC3
4rqw_B1e-1851972192Transcription factor MYC3
4rs9_A1e-1851972192Transcription factor MYC3
4yz6_A1e-1851972192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377382ERRRRE
2378383RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.498100.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379883670.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117040.0AK111704.1 Oryza sativa Japonica Group cDNA clone:J023013E24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635094.10.0PREDICTED: anthocyanin regulatory R-S protein
RefseqXP_015635095.10.0PREDICTED: anthocyanin regulatory R-S protein
SwissprotP130271e-173ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLB8ASW30.0B8ASW3_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA014567-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.19e-80bHLH family protein